Documents & Publications

This page collects documents and other outputs produced within the project - including project deliverables and presentations given at external events - reflecting the dynamic BioDT community on Zenodo.

Showing 11 - 20 of 76
Article

Prototype Biodiversity Digital Twin: Phylogenetic Diversity

Published on:
Vladimir Mikryukov, Kessy Abarenkov, Thomas S. Jeppesen, Dmitry Schigel, Tobias Guldberg Frøslev

Phylogenetic diversity (PD) represents a fundamental measure of biodiversity, encapsulating the extent of evolutionary history within species groups.

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Article

Prototype Biodiversity Digital Twin: prioritisation of DNA metabarcoding sampling locations

Published on:
Tobias Guldberg Frøslev, Robin James Boyd, Dmitry Schigel

Advancements in environmental DNA (eDNA) metabarcoding have revolutionised our capacity to assess biodiversity, especially for cryptic or less-studied organisms, such as fungi, bacteria and micro-invertebrates.

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Article

Biodiversity data standards for the organization and dissemination of complex research projects and digital twins: a guide

Published on:
Carrie Andrew, Sharif Islam, Claus Weiland, Dag Endresen

Biodiversity data are substantially increasing, spurred by technological advances and community (citizen) science initiatives. To integrate data is, likewise, becoming more commonplace. Open science promotes open sharing and data usage.

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Presentation

Demonstration of the Shiny App and Integration with Other BioDT pDTs

Published on:
Kata-aho, Sara

The BioDT Pollinator pDT is a digital tool designed to assess the quality of landscapes for honey bees. This innovative prototype combines real-world data with advanced simulation techniques to provide actionable insights for conservation efforts.

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24 views
9 downloads
Presentation

BioDT Webinar: Overview of the BioDT Project and Pollinator pDT

Published on:
Grimm, Volker

Description

 

The BioDT Pollinator pDT is a digital tool designed to assess the quality of landscapes for honey bees. This innovative prototype combines real-world data with advanced simulation techniques to provide actionable insights for conservation efforts.

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31 views
7 downloads
Presentation

BioDT pDT Pollinator Webinar, Honey bee prototype Digital Twin - Workflow

Published on:
Groeneveld, Jürgen

The BioDT Pollinator pDT is a digital tool designed to assess the quality of landscapes for honey bees. This innovative prototype combines real-world data with advanced simulation techniques to provide actionable insights for conservation efforts.

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31 views
9 downloads
Article

Brood indicators are an early warning signal of honey bee colony loss—a simulation-based study

Published on:
Jürgen Groeneveld, Richard Odemer, Fabrice Requier

Honey bees (Apis mellifera) are exposed to multiple stressors such as pesticides, lack of forage, and diseases.

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Article

Long-term monitoring of the fish community in the Minho Estuary (NW Iberian Peninsula)

Published on:
Allan T. Souza, Martina I Ilarri, Ester Dias, Mário J Araújo, António Roleira, Ana Catarina Braga, Ana Rita Carvalho, Micaela Mota, Maria Helena Correia, Ana Lages, Ana Moura, Carlos Antunes.

The paper presents an extensive fish sampling dataset spanning a long-term period from 2010 to 2019.

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Report

Mastering Data Citation: Insights from the BioDT Research Infrastructure. Report of webinars November 2023

Published on:
Giuffrida, Rita; Sharif, Islam; Wohner, Christoph; López Lérida, Joaquín; Noesgaard, Daniel

Data citation is a fundamental step in promoting transparency, credibility, and collaboration in the field of biodiversity research.

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92 views
47 downloads
Article

Accelerating joint species distribution modeling with Hmsc-HPC: A 1000x faster GPU deployment

Published on:
Anis Ur Rahman, Gleb Tikhonov, Jari Oksanen, Tuomas Rossi, Otso Ovaskainen

Joint Species Distribution Modelling (JSDM) is a powerful and increasingly widely used statistical methodology in biodiversity modelling, enabling researchers to assess and predict the joint distribution of species across space and time.

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